PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G259800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 337aa    MW: 38118.8 Da    PI: 8.3671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G259800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-1671116147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  Aqcoe3G259800.1.p  71 RGHWKPGEDARLIELVSQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 116
                        899*****************************.***********996 PP
2Myb_DNA-binding50.64.5e-16123167147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++++eE+e+l+ a + +G++ W+ Iar ++ gRt++ +k++w+  
  Aqcoe3G259800.1.p 123 RKAFSQEEEEKLLAARRFYGNK-WAVIARLFP-GRTDNAVKNHWHVT 167
                        789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.37466121IPR017930Myb domain
SuperFamilySSF466893.48E-2770164IPR009057Homeodomain-like
SMARTSM007174.8E-1370119IPR001005SANT/Myb domain
PfamPF002491.1E-1571116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2572124IPR009057Homeodomain-like
CDDcd001671.84E-1174115No hitNo description
SMARTSM007172.3E-14122170IPR001005SANT/Myb domain
PROSITE profilePS5129417.599122172IPR017930Myb domain
PfamPF002494.2E-13123165IPR001005SANT/Myb domain
CDDcd001671.13E-10125165No hitNo description
Gene3DG3DSA:1.10.10.609.6E-19125171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEMQFLSSSP LELQQKGWNF QTLNSKGNDF YESELIFMNQ GGDMEEKIES FAAKKDNEVI  60
AGKFHVKSCS RGHWKPGEDA RLIELVSQFG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR  120
INRKAFSQEE EEKLLAARRF YGNKWAVIAR LFPGRTDNAV KNHWHVTMAR RHKEESNVYK  180
RRKVSACSQP VYNTMEMKMT NSTNNAQREF IITSSKDESV STCTDLSMNS SSTRSNPFLF  240
TNNSPHKHQQ LYQVQMGISE KNIVNGCCQK LNGSAGNGMY QFESTMMAMG INQSGSSFSN  300
SEVSTDSMAI NVKDSIENVS ESSNVHFIDF LGVGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-31711714104C-Myb DNA-Binding Domain
1msf_C1e-31711714104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622094.11e-104transcription factor MYB56-like
TrEMBLA0A2G5CI780.0A0A2G5CI78_AQUCA; Uncharacterized protein
STRINGAquca_053_00075.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-68myb domain protein 105