PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G265700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 319aa    MW: 34956.8 Da    PI: 10.2097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G265700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-1391135347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+  ++++ + lG+g+W+ Ia+   ++Rt+ q+ s+ qky
  Aqcoe3G265700.1.p  91 PWTAQEHRTFLEGLQNLGKGDWRGIAKSYVTTRTPTQVASHAQKY 135
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.026824IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.39284140IPR017930Myb domain
SuperFamilySSF466891.51E-1686139IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-1787139IPR006447Myb domain, plants
SMARTSM007172.8E-988138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-1188134IPR009057Homeodomain-like
CDDcd001672.42E-891136No hitNo description
PfamPF002492.4E-1191135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGKDAGTKCS HCGKAGHNQR TCTEKIVKLF GVKISPPNIK KEREDLMKKS FSMGNLQALM  60
KDDDDLDRGY NSDEGPLRSK KDGHERKKGV PWTAQEHRTF LEGLQNLGKG DWRGIAKSYV  120
TTRTPTQVAS HAQKYFLRQA AANKKKRRSS LFDMAINENG ETSETAPLKD IAEVPKQTGP  180
SVLVGNPVAS QGMRAPPIPM KRTQSMPNFN GFPYMARMSD RNLFPAVSVV PVVNICNLGY  240
GYQHKPQNSF TAYTPFVSQS YMHPFSPPTT PQAVPKVESH GSSAVNTDLN LSIAQPDVGD  300
RVKLPTHTSN MNGAIGVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CI090.0A0A2G5CI09_AQUCA; Uncharacterized protein
STRINGAquca_053_00029.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-55MYB_related family protein