PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G266600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 274aa    MW: 31635.2 Da    PI: 9.2934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G266600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-0891110626
                        -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                        C+  +r+G C++Gd C+FaHg
  Aqcoe3G266600.1.p  91 CP-LFRNGSCPRGDLCQFAHG 110
                        66.5678*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.04E-585115IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-485111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4586112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-690113IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-691110IPR000571Zinc finger, CCCH-type
SMARTSM0035634120143IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQSAAVSKPF LRKSERGLLG MYNPHFFPVP QPRIMNSSLY NKSEEFFMYT FKIRRCSKLR  60
SHDWTECPFA HKGEKARRRD PHKYHYCAII CPLFRNGSCP RGDLCQFAHG IFEFWLHPAR  120
FRTRFCNSGP FCLRKVCFFA HSPKELRPNT GYKCQCHTRM NAPPARRTFP GNTSRRPMIP  180
TYFPSTSTGS NRNQVQLPIL PNYPSPSTNV GNKKKVEVTW EDVMEHFKVL NLEEHAGGAE  240
EDQLGHILDA IDYSTVDWTA EIPDVDWVSD LVK*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO650367e-55C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2G5CHZ30.0A0A2G5CHZ3_AQUCA; Uncharacterized protein
STRINGAquca_053_00019.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-57C3H family protein