PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G271500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 622aa MW: 72019 Da PI: 9.5886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G271500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.5e-07	25	92	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 ++Y +Y+++ GF v k++skk ++g + + C ++g++e+++k+ + ++r+ ++t+ a+l++ + + Aqcoe3G271500.1.p 25 DYYGKYGNDKGFPVLKRSSKKG-DDGIGRWVIYACARSGTSESNSKN---AFKKRPISKTNFSARLNIVLYS 92 59************998887.899899************9999...8899999999999999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.6E-22	202	281	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.138	466	502	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-5	473	500	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0019	477	504	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MRLLEEEPMD IKVGMDFSTS EELYDYYGKY GNDKGFPVLK RSSKKGDDGI GRWVIYACAR 60 SGTSESNSKN AFKKRPISKT NFSARLNIVL YSDGSLGKSR FYKYNRIIQP FVKRRLEMND 120 RAGIRPNKSF NSFVVEAGGH DNVPFLEKDC YNHLDKFRRL RLGDGDAAAI QNYFTKMQAN 180 NSNFYYLLDL VEEARIKNFG EVVTFDTTYL TNKYDMLFAP FVGVNHHGHS ILLGCALISK 240 CMGGRAPNAI ITDQARAMKN AIEVVFPNTR HRWCLWHIMK KLPEKLGGYK QGRSQGGDYG 300 AIKNKMKNAV YDSLSYNEFE EKRNLFINKY NLHKNDWLNG LYIERQHWVP VFVKYIFWAG 360 MSTTQRSESM NVFFDGYVNS KTTLKQFVEQ YENALRSKTE KENQADFNSF NSWIPCIYTT 420 TKFKEFQNEL TGKIYCDVSA VETRSDFMVY EILEDKIGGL DRQNTFTVSF RQSDCDIKCN 480 CRLFEFRGII CRHSVVVLIQ QKKRYKEGSH EVKITYFDWM QNPKNEQFDR LCNAFYQVAD 540 LATDNKDKVE NIIQWIKKLR DDLSENSRPS SVPVSQLSRS PTIVDISPAV EEINKVRSPL 600 AVPKRGRAPF KRKQSRGEQV I*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MRLLEEEPMD IKVGMDFSTS EELYDYYGKY GNDKGFPVLK RSSKKGDDGI GRWVIYACAR  60
SGTSESNSKN AFKKRPISKT NFSARLNIVL YSDGSLGKSR FYKYNRIIQP FVKRRLEMND  120
RAGIRPNKSF NSFVVEAGGH DNVPFLEKDC YNHLDKFRRL RLGDGDAAAI QNYFTKMQAN  180
NSNFYYLLDL VEEARIKNFG EVVTFDTTYL TNKYDMLFAP FVGVNHHGHS ILLGCALISK  240
CMGGRAPNAI ITDQARAMKN AIEVVFPNTR HRWCLWHIMK KLPEKLGGYK QGRSQGGDYG  300
AIKNKMKNAV YDSLSYNEFE EKRNLFINKY NLHKNDWLNG LYIERQHWVP VFVKYIFWAG  360
MSTTQRSESM NVFFDGYVNS KTTLKQFVEQ YENALRSKTE KENQADFNSF NSWIPCIYTT  420
TKFKEFQNEL TGKIYCDVSA VETRSDFMVY EILEDKIGGL DRQNTFTVSF RQSDCDIKCN  480
CRLFEFRGII CRHSVVVLIQ QKKRYKEGSH EVKITYFDWM QNPKNEQFDR LCNAFYQVAD  540
LATDNKDKVE NIIQWIKKLR DDLSENSRPS SVPVSQLSRS PTIVDISPAV EEINKVRSPL  600
AVPKRGRAPF KRKQSRGEQV I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021813341.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G5CBR0	0.0	A0A2G5CBR0_AQUCA; Uncharacterized protein
STRING	Aquca_067_00032.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-76	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G271500.1.p