PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G283200.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 167aa MW: 19034.7 Da PI: 7.5042

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G283200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	160	1.9e-49	2	147	23	169
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevp 110 vsvP +sl+kvvtvrCGhC+ llsvn++ as qlla+ +e+ ++e+ +e+ + ++ s++ ++es+ + s + +++e+e +p Aqcoe3G283200.3.p 2 QVSVPCSSLLKVVTVRCGHCSGLLSVNMMRASfipvQLLASL---HENEHKEVCHEELERPKDPPSKEFNKESPLMNYSDN--DDEEEEIIP 88 69************************99985553444444...445555555555555555555555555555555442..567777788 PP YABBY 111 rvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 p +++PPekrqr+Psaynrfik+eiqr+k+ + +i+h+eafsaa+knWahfP+i ++ Aqcoe3G283200.3.p 89 LNPIINKPPEKRQRAPSAYNRFIKDEIQRLKSIDLNITHKEAFSAASKNWAHFPRIQHQ 147 8888*************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-49	2	147	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-5	93	142	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MQVSVPCSSL LKVVTVRCGH CSGLLSVNMM RASFIPVQLL ASLHENEHKE VCHEELERPK 60 DPPSKEFNKE SPLMNYSDND DEEEEIIPLN PIINKPPEKR QRAPSAYNRF IKDEIQRLKS 120 IDLNITHKEA FSAASKNWAH FPRIQHQLDG ESCSYGVRKV DKKPRC*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248516.1	1e-63	PREDICTED: axial regulator YABBY 4
Refseq	XP_026397983.1	3e-63	axial regulator YABBY 5-like
Refseq	XP_026419324.1	2e-63	axial regulator YABBY 4-like
Swissprot	Q9LDT3	7e-39	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1U7Z7V4	3e-62	A0A1U7Z7V4_NELNU; axial regulator YABBY 4
STRING	XP_010248516.1	4e-63	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-30	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G283200.3.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]