PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G284900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 202aa    MW: 22629.6 Da    PI: 4.7915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G284900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-112459239
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                         WT++Ed  +v a+k++ ++ W +Ia++++ gRt+ q
  Aqcoe3G284900.1.p 24 SCWTEDEDMAFVVAHKRYNNR-WVKIAEEIP-GRTETQ 59
                       68*******************.*********.***876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.19E-19159IPR009057Homeodomain-like
PROSITE profilePS5129415.331121IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-12128IPR009057Homeodomain-like
SMARTSM007177.1E-72270IPR001005SANT/Myb domain
PROSITE profilePS512948.6542272IPR017930Myb domain
PfamPF002491.5E-92459IPR001005SANT/Myb domain
CDDcd001671.13E-92659No hitNo description
Gene3DG3DSA:1.10.10.608.1E-102963IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDGRIGKQCR DRWNNHLRPD IKKSCWTEDE DMAFVVAHKR YNNRWVKIAE EIPGRTETQD  60
KKYRHSKNPP PSPILQEYIN NIRNKSSGTT KKVANAPTSG CYIPMVDTLA AQIPLADQGS  120
CYIPMVDTLA AQIPLTDQGG EVVASPSLSF DFDASLFYEE MFSIINEGII DNVMPSDVDH  180
LSPCSVNKEM DLFEMISEAT I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-201663499C-Myb DNA-Binding Domain
1msf_C4e-201663499C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5F1Q32e-85A0A2G5F1Q3_AQUCA; Uncharacterized protein
STRINGAquca_002_00118.13e-86(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.14e-23myb domain protein 118