PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G306600.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 242aa MW: 27407.4 Da PI: 8.4483

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G306600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k F ++ L H++ H Aqcoe3G306600.3.p 88 YECQFCYKEFANSQALGGHQNAH 110 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-6	84	114	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.31E-7	84	115	No hit	No description
PROSITE profile	PS50157	11.344	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDRDCLDRTN IVSTSWNGDN VFHAERHVAE KKLRLFGFEL DPYSNDRSSR ASEEGDESVN 60 SSTTVLSQKE KPAVKEKSPV TGLEEKKYEC QFCYKEFANS QALGGHQNAH KKERLKKKRL 120 QLQARKANIH QYLQPLQNPN GFGYYGSPAW FYEPSSYGPE FTFIDESQIS FSAYDQNAYL 180 NRSLQSCSYS LPTHVPDQRG SKFSLIQTHG SRENRPVAIK PSPSLTKQSC KSLDLHLGLD 240 T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254962.1	4e-91	PREDICTED: uncharacterized protein LOC104595774
TrEMBL	A0A2G5F2Q6	0.0	A0A2G5F2Q6_AQUCA; Uncharacterized protein
STRING	Aquca_002_00315.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	7e-10	zinc finger protein 5

Link Out ? help Back to Top
Phytozome	Aqcoe3G306600.3.p