PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G315800.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 288aa    MW: 30948 Da    PI: 5.2343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G315800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11170217455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Aqcoe3G315800.3.p 170 SHSLAERARREKISERMKILQDLVPGC----NKVIGKAMVLDEIINYIQSLQ 217
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-11164221No hitNo description
SuperFamilySSF474594.58E-18164235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-19166235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.942166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDPSSMINDA NGSSYNLAEI WQFPLTNNGG VSESGGVLSG RRGHLGQNLA GFGDMGTGSR  60
GNMSIDDSSV VTEYSGRNGD ASGKKRRDAT GSEDESSKLM STSSGNDLND VDGKRLKVSG  120
LRNENGDSKA EFEASSDAGN KPAEQSNQPS EAPKQDYIHV RARRGQATDS HSLAERARRE  180
KISERMKILQ DLVPGCNKVI GKAMVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNPAIDG  240
FSPKDFSAQP FDASGIPFGS QATREYGQGS APEWLHMQVG GSFERTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807413e-83FQ380741.1 Vitis vinifera clone SS0ACG35YM08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272169.11e-144PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ84T081e-81BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2G5F2Z40.0A0A2G5F2Z4_AQUCA; Uncharacterized protein
STRINGAquca_002_00402.11e-179(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-93BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]