PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G332700.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 32207.8 Da PI: 5.8017

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G332700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.7e-18	76	129	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Aqcoe3G332700.2.p 76 KKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 129 456899***********************************************9 PP
2	HD-ZIP_I/II	130.8	5.5e-42	75	165	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L++++++L++e+ Aqcoe3G332700.2.p 75 EKKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDQLKRQFDAIKADNDSLQAQNKKLHAEI 165 69**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-19	65	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.4E-17	74	135	IPR001356	Homeobox domain
CDD	cd00086	8.36E-16	76	132	No hit	No description
Pfam	PF00046	2.8E-15	76	129	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	78	138	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	102	111	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	111	127	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.9E-16	131	171	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MACNEMAFFP SNFMIQSSHE DHQDHHPPSS LNPIIPSCTP QDFHGKRSMS FSGIDMCEEA 60 NGEDDLSDDG SQVGEKKRRL NMEQVRTLEK NFELGNKLEP ERKMQLARAL GLQPRQIAIW 120 FQNRRARWKT KQLEKDYDQL KRQFDAIKAD NDSLQAQNKK LHAEILALKN REPTEFINLN 180 KETEGSCSNR SDENSSDINL DTSRTPAIDS PLSSHQSRPL FPSSLRPTSM VQLLQNTSKS 240 DMQCSKIEHH NVQEESFCNM FSIDDQPGFW PWPEQGSQFH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256832.1	1e-164	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	1e-105	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G5F3X7	0.0	A0A2G5F3X7_AQUCA; Uncharacterized protein
STRING	Aquca_002_00545.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-107	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G332700.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]