PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G337400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 403aa    MW: 45180.8 Da    PI: 7.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G337400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52141411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  Aqcoe3G337400.1.p  14 MLPGFRFHPTDEELVGFYLKRKIQHRSLPI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 104
                        579***************************.89***************8888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Aqcoe3G337400.1.p 105 YSSeGNKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141
                        **956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5813172IPR003441NAC domain
PROSITE profilePS5100556.99214172IPR003441NAC domain
PfamPF023652.3E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDDKNDFDKV DDVMLPGFRF HPTDEELVGF YLKRKIQHRS LPIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLTDSAPP KRPLDKSFPA NDSWAICRIF KKTNSMAQRA  180
LSHSWVSPFP ETTGTDTLPE GTHYTQFSPE NLSCTTEARS VFQLCCNNDV YQSSTTGTTY  240
PSIDAQSYKS YNTMVCKPNL PSTPNGELPS GLMFSGFDMS GPAKCTVDVT SLLANLSPAF  300
LGDGGKTSEN IDFAGAQQQS NGFSINLPQE MQGNMRMGEE ETCLRKNSNA SHINSHWGAR  360
SVGFPFNLPL DNPDAWKPNL PWDSPPCPSE LSTSYSTNKC YT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-521617519168NO APICAL MERISTEM PROTEIN
1ut4_B2e-521617519168NO APICAL MERISTEM PROTEIN
1ut7_A2e-521617519168NO APICAL MERISTEM PROTEIN
1ut7_B2e-521617519168NO APICAL MERISTEM PROTEIN
4dul_A2e-521617519168NAC domain-containing protein 19
4dul_B2e-521617519168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258365.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-106FEZ_ARATH; Protein FEZ
TrEMBLA0A2G5F3U60.0A0A2G5F3U6_AQUCA; Uncharacterized protein
STRINGAquca_002_00586.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-105NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]