PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G338200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ZF-HD
Protein Properties Length: 349aa    MW: 38118.3 Da    PI: 8.3405
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G338200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.32.2e-3465122359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         v+YkeClkNhAaslGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++e+
  Aqcoe3G338200.1.p  65 VVVYKECLKNHAASLGGHALDGCGEFMPSPNSVhTDPTSLKCAACGCHRNFHRRDPED 122
                        689**************************99988********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2866120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2366122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1968119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-3068119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.67E-19212280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-29213280IPR009057Homeodomain-like
TIGRFAMsTIGR015659.1E-25219275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELKTPTPIN TTTTTTTTTT TPETETETPP TITKHHLSKA LSFTNGAFKL LHHSTPPPLL  60
LTPSVVVYKE CLKNHAASLG GHALDGCGEF MPSPNSVHTD PTSLKCAACG CHRNFHRRDP  120
EDVVQSTHLI EYHNPHHHLL QHQLPTQIRA PTSPTNESAS LSPPPISSSY YPASAPQMLL  180
ALSTGGLSVK PENHHQQQQT TTADGTVISP MGTGSNGGRK RFRTKFSQEQ KDKMYSFSEK  240
LGWKMQKRDE SLVEEFCNEV GVGKSVLKVW MHNNKHTFGK RDVNGAITPN LLLHHNNNNN  300
NNNNNTTVSS SSPPLPNNIN NNNNNNHENH GNSSVHHHVG TNCSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-212202771875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257380.11e-100PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A200QSE31e-100A0A200QSE3_9MAGN; ZF-HD homeobox protein
STRINGXP_010257380.11e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.19e-56zinc finger homeodomain 1