PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G342000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family G2-like
Protein Properties Length: 257aa    MW: 28949.7 Da    PI: 5.8287
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G342000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.1e-312074155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+Wtp LH+rF+eav+qLGG+e+AtPk+++++m+++gLtl+h+kSHLQkYRl
  Aqcoe3G342000.1.p 20 KPRLKWTPVLHQRFIEAVTQLGGAERATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-291877IPR009057Homeodomain-like
SuperFamilySSF466896.81E-151975IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-212075IPR006447Myb domain, plants
PfamPF002491.7E-72273IPR001005SANT/Myb domain
PfamPF143796.2E-22118164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSLQKMQNQE MDLALSSDAK PRLKWTPVLH QRFIEAVTQL GGAERATPKS LMRVMGIPGL  60
TLYHLKSHLQ KYRLGKSQLS ESCDDNEQED NRENEIEGGH MNVKVNEKIH AQSDEGLHVT  120
QALKMQIDVQ NKLHEQIEVQ RHLQLRIEAQ GMYLQSILKK AQETLSGYNS SSTELEAAKT  180
EVSELVSMVE TGCLDSSFSE FTKTGCFVLD NEGKKLVRTT DCSLDSSLTS FESYGEIRGS  240
NFHWRSIQVI EATMQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-201976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463063.11e-102PREDICTED: uncharacterized protein LOC101303116 isoform X1
SwissprotF4I2742e-72PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2G5F4A21e-116A0A2G5F4A2_AQUCA; Uncharacterized protein
STRINGAquca_002_00628.11e-117(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-71G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]