PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G345900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 225aa    MW: 25782 Da    PI: 7.044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G345900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.4e-5391341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++++ ++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nrat+sgyWkatg+dk++
  Aqcoe3G345900.1.p   9 LPPGFRFHPTDEELIMYYLRNQMVSRTCPI-SIISEVDIYKFDPWELPEKADFGENEWYFFTPRDRKYPNGVRPNRATTSGYWKATGTDKAI 99 
                        79****************************.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s +++ vg++ktLvfy+gr pkg+k+dW+m+eyrl
  Aqcoe3G345900.1.p 100 HS-GSKYVGVRKTLVFYEGRPPKGVKSDWIMNEYRL 134
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-664162IPR003441NAC domain
PROSITE profilePS5100560.3059162IPR003441NAC domain
PfamPF023654.2E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEGKNMCELP PGFRFHPTDE ELIMYYLRNQ MVSRTCPISI ISEVDIYKFD PWELPEKADF  60
GENEWYFFTP RDRKYPNGVR PNRATTSGYW KATGTDKAIH SGSKYVGVRK TLVFYEGRPP  120
KGVKSDWIMN EYRLGDSGGR LPTKQNGSMR LDDWVLCRIY KKGHSGRADE TARVSSTDDT  180
AITTRSDDSN QEALTLPRIF SFGHLLEAEQ YLSLSHLLSE NIFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-69916717170NO APICAL MERISTEM PROTEIN
1ut4_B3e-69916717170NO APICAL MERISTEM PROTEIN
1ut7_A3e-69916717170NO APICAL MERISTEM PROTEIN
1ut7_B3e-69916717170NO APICAL MERISTEM PROTEIN
4dul_A3e-69916717170NAC domain-containing protein 19
4dul_B3e-69916717170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046037.11e-114PREDICTED: NAC transcription factor 29
SwissprotK4BWV21e-106NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A2G5F4651e-168A0A2G5F465_AQUCA; Uncharacterized protein
STRINGAquca_002_00663.11e-168(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-101NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]