PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G353200.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 380aa    MW: 41763 Da    PI: 8.7963
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G353200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.21.9e-3484140259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Aqcoe3G353200.2.p  84 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGHVTEIIYKGQHNHE 140
                        8****************************************.***************8 PP
2WRKY105.72.4e-33264322159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k+v++tYeg+Hnh+
  Aqcoe3G353200.2.p 264 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSQGCNVRKHVERASTDAKAVITTYEGKHNHD 322
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-3080142IPR003657WRKY domain
SuperFamilySSF1182901.18E-2681142IPR003657WRKY domain
SMARTSM007742.2E-3883141IPR003657WRKY domain
PfamPF031064.5E-2684140IPR003657WRKY domain
PROSITE profilePS5081123.28484142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37249324IPR003657WRKY domain
SuperFamilySSF1182901.7E-29256324IPR003657WRKY domain
PROSITE profilePS5081138.985259324IPR003657WRKY domain
SMARTSM007741.7E-39264323IPR003657WRKY domain
PfamPF031064.8E-26265322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSHQQALAQV TAQAAQLQSH FHIPSEYSSN ILGPPATSLD QQPSFGTAPL QMPASRTTMV  60
ESSVVSYSEQ RSQPPPLIVD KPAEDGYNWR KYGQKQVKGS EFPRSYYKCT HPNCPVKKKV  120
ERSLDGHVTE IIYKGQHNHE PPQHIKRTKD GGNSNGRPNL AVNTEMGGVQ DHSGNLGRSN  180
ETAAALSKSR RDQESSQATQ EQLSGSSDGE EVGDAETRVD AEDEGQPDPK RRNTGVRVSE  240
PASSHRAVTE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TSQGCNVRKH  300
VERASTDAKA VITTYEGKHN HDVPAAKNSS HNTAHSNLSQ IKPQNAVGVK HTLINKNMDF  360
GGGDQQAVSL LRFKEEQVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-4184325878Probable WRKY transcription factor 4
2lex_A5e-4184325878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258215.11e-179PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-136WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2G5F4G20.0A0A2G5F4G2_AQUCA; Uncharacterized protein
TrEMBLA0A2G5F4M40.0A0A2G5F4M4_AQUCA; Uncharacterized protein
STRINGAquca_002_00721.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-131WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]