PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G356300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 221aa    MW: 25025.5 Da    PI: 9.959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G356300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029121139321
                        ETTTTEEESSHHHHHHHHH CS
            zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                        C+ C  +Fs+ks L++H +
  Aqcoe3G356300.1.p 121 CTLCQVTFSSKSALRQHRQ 139
                        99***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-697147No hitNo description
SMARTSM004511.4116150IPR003604Zinc finger, U1-type
SMARTSM003550.091119143IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099119143IPR007087Zinc finger, C2H2
PfamPF128741.1E-4121138No hitNo description
PROSITE patternPS000280121143IPR007087Zinc finger, C2H2
SuperFamilySSF576679.68E-8155193No hitNo description
SMARTSM004510.0013159193IPR003604Zinc finger, U1-type
SMARTSM0035525162186IPR015880Zinc finger, C2H2-like
PfamPF128741.7E-7163186No hitNo description
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGFENFRADY GNPSGSCSTQ SMNQEHILLD ERLRENVMPL ELAIKRELDY RVRMENLQAR  60
ICADSNEAFV PSQGLPLVPS PSIVGKKRKT LSNNLRFFPA QPPRSSNRGH SAQHEQGKLL  120
CTLCQVTFSS KSALRQHRQD SLHKANLMEN QKKNRQSKNK PQWCKLCRIS CSDERAFTQH  180
LAGKKHAASV HAIEAAKSIK ETEKKVLTVK WDELEWDTVG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5F4J91e-164A0A2G5F4J9_AQUCA; Uncharacterized protein
STRINGAquca_002_00750.11e-162(Aquilegia coerulea)