PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G359300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 802aa MW: 91066.8 Da PI: 5.663

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G359300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.7	4.7e-29	75	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+ ++ + ++k rr ra tr gCka ++v++++ gkw+v+kle++Hn Aqcoe3G359300.1.p 75 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRRGKRARkldssdESKIRRARAITREGCKALMTVRRKDCGKWYVAKLEKNHN 166 6**************************************98887789999899999****************************** PP FAR1 87 Hela 90 Hel+ Aqcoe3G359300.1.p 167 HELV 170 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-26	75	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-33	291	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.756	573	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-9	573	608	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.1E-8	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MEETIIEDKD LMDTYVTLED ESEECGVIED VEIPIVVDDA KKDGLMSSEV SASLVGGIIE 60 PTLDMEFSSE EDAKNFYNAY AKQTGFSIRV NSYYRSKKDN SIISREFCCS KEGFRRGKRA 120 RKLDSSDESK IRRARAITRE GCKALMTVRR KDCGKWYVAK LEKNHNHELV APAMRHFLRS 180 HRTEFDPDKS AINTFSSPGM ISNSTVNHVS EEYGGINTIG FSMQDQCNYI GKGRLSIFGL 240 DAQSLLGFFK IMQANDPAFF YAIQVDEEDR LSSVFWVDTR SRIAYNYFSD VVTFETTYQV 300 NQYKIPFAPF TGVNHHKQSV LFGCALLADE TESTFNWLFK TWLEAMSGRQ PGLIMTDHDT 360 AIRSAVSSVF PESTHRYCKW HILSKMPKEL GHVCGALPKT FQLEFEKSVN KSESAEEFEL 420 AWDVLLHKYN LRGNEWLQAL YVDRKDWVPA YLRDTFFAGM LVTQRSCSVN SLFDGYVNAR 480 TSLQDFTEKY EKALDDQFEK ESRAEFDTFY TKPVLKTPLP IEKQAAEVYT RKLFTVFQDE 540 VFESLLLAVR KSCEDVTTIT YEVARFDDVH RVYVVSCSTS EQTASCNCKM FEFEGILCRH 600 VLAVFKATNV FMLPSHYILK RWTRNARDEV VSDITPSVES QVESYGAKNS QYNVLFQEAI 660 KCAEEGVASD HSFKVALTCL REARKKIVDA KKNALSTSKH ETVISASYQE GDQIFLGELD 720 SLPSVIHDPL VAKATDSPAS VSNYTEQPIN RTSTCIRCKC PGHVSCTCPW LKDSDPNTVM 780 DPTSMDLGSI NNHRGPENCQ R*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MEETIIEDKD LMDTYVTLED ESEECGVIED VEIPIVVDDA KKDGLMSSEV SASLVGGIIE  60
PTLDMEFSSE EDAKNFYNAY AKQTGFSIRV NSYYRSKKDN SIISREFCCS KEGFRRGKRA  120
RKLDSSDESK IRRARAITRE GCKALMTVRR KDCGKWYVAK LEKNHNHELV APAMRHFLRS  180
HRTEFDPDKS AINTFSSPGM ISNSTVNHVS EEYGGINTIG FSMQDQCNYI GKGRLSIFGL  240
DAQSLLGFFK IMQANDPAFF YAIQVDEEDR LSSVFWVDTR SRIAYNYFSD VVTFETTYQV  300
NQYKIPFAPF TGVNHHKQSV LFGCALLADE TESTFNWLFK TWLEAMSGRQ PGLIMTDHDT  360
AIRSAVSSVF PESTHRYCKW HILSKMPKEL GHVCGALPKT FQLEFEKSVN KSESAEEFEL  420
AWDVLLHKYN LRGNEWLQAL YVDRKDWVPA YLRDTFFAGM LVTQRSCSVN SLFDGYVNAR  480
TSLQDFTEKY EKALDDQFEK ESRAEFDTFY TKPVLKTPLP IEKQAAEVYT RKLFTVFQDE  540
VFESLLLAVR KSCEDVTTIT YEVARFDDVH RVYVVSCSTS EQTASCNCKM FEFEGILCRH  600
VLAVFKATNV FMLPSHYILK RWTRNARDEV VSDITPSVES QVESYGAKNS QYNVLFQEAI  660
KCAEEGVASD HSFKVALTCL REARKKIVDA KKNALSTSKH ETVISASYQE GDQIFLGELD  720
SLPSVIHDPL VAKATDSPAS VSNYTEQPIN RTSTCIRCKC PGHVSCTCPW LKDSDPNTVM  780
DPTSMDLGSI NNHRGPENCQ R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259163.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259169.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010259175.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2G5F4U2	0.0	A0A2G5F4U2_AQUCA; Uncharacterized protein
STRING	Aquca_002_00779.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe3G359300.1.p