PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G360300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 311aa    MW: 34967.4 Da    PI: 6.4068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G360300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31171228259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers edp++v++tYeg+H h+
  Aqcoe3G360300.1.p 171 EDGYRWRKYGQKAVKNSPYPRSYYRCTNSKCTVKKRVERSCEDPTIVITTYEGQHCHH 228
                        8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32155229IPR003657WRKY domain
SuperFamilySSF1182902.22E-27162228IPR003657WRKY domain
PROSITE profilePS5081129.516165230IPR003657WRKY domain
SMARTSM007747.0E-36170229IPR003657WRKY domain
PfamPF031062.1E-24171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDDDKKRKLE SEMISDSSSW VDSSYFFENE ERQRSILNEF GWNLPQQQQQ TETNQETTSF  60
MEFDDNQIEL EQQQQQRSDL AGSFLLPTEN HSTSSTTPTV IATTTTVEKS GDASTSNPSV  120
SSSSSDELPE KSTGSDGKPP EKPSKGRKKG QKRIRQQRFA FMTKSDVDHL EDGYRWRKYG  180
QKAVKNSPYP RSYYRCTNSK CTVKKRVERS CEDPTIVITT YEGQHCHHTV SFPRGSVFSH  240
EGSFGGGLNT TSQIYAPAMQ YTVSGPLSVT QSHQPQLEVR PAQMQPQQTL QNPSDEGLLG  300
DIVPPGMRNR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25160227774Probable WRKY transcription factor 4
2lex_A1e-25160227774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299838.11e-102probable WRKY transcription factor 57
RefseqXP_021299839.11e-102probable WRKY transcription factor 57
SwissprotQ9C9831e-66WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A2G5F5430.0A0A2G5F543_AQUCA; Uncharacterized protein
STRINGAquca_002_00789.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-54WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]