PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G373600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28427.2 Da    PI: 9.7666
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G373600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.5e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eys+
  Aqcoe3G373600.1.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLFEYST 59
                       79***********************************************96 PP
2K-box103.62.5e-34781744100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        ++   ++++ + +++ e+ kLk++ie Lq++qRh+ GedLe++slkeLq+LeqqL+++lk+iR++Kn+l++e+i+elqkke++l e+n++L 
  Aqcoe3G373600.1.p  78 RELAGTDSESQGNWSLEYVKLKAKIEILQKNQRHYNGEDLEKMSLKELQNLEQQLDSALKQIRARKNQLMHESISELQKKERALTEQNNQLG 169
                        555666778889******************************************************************************** PP

              K-box  96 kklee 100
                        kkl+e
  Aqcoe3G373600.1.p 170 KKLKE 174
                        **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-34291IPR002100Transcription factor, MADS-box
CDDcd002652.59E-41276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.08288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLFEYSTD  60
SGMDNILERY ERYSYAEREL AGTDSESQGN WSLEYVKLKA KIEILQKNQR HYNGEDLEKM  120
SLKELQNLEQ QLDSALKQIR ARKNQLMHES ISELQKKERA LTEQNNQLGK KLKEKEKELA  180
QQSPWEQPNR GQNSPSMLIS QTLPSLNIGV NYETRSTRAE EEGTQPQPAR PTTLMPPWML  240
RHVNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-23184183MEF2 CHIMERA
6byy_B2e-23184183MEF2 CHIMERA
6byy_C2e-23184183MEF2 CHIMERA
6byy_D2e-23184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802530.0JX680253.1 Aquilegia coerulea MADS-box protein FL1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260844.11e-125PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-119AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLK7X6Q91e-179K7X6Q9_AQUCA; MADS-box protein FL1B
STRINGAquca_002_00911.11e-180(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-83AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]