PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G373700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 104aa    MW: 11945.8 Da    PI: 9.5172
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G373700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.82.5e-32959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Aqcoe3G373700.1.p  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
                       79***********************************************96 PP
2K-box332.6e-1259933367
              K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRs 67
                       ++ R+ll e+L+s+s keL qLe+qL+ slk+iR 
  Aqcoe3G373700.1.p 59 STSRNLLEEELGSISTKELDQLEHQLDMSLKQIRY 93
                       577*******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.627161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-42160IPR002100Transcription factor, MADS-box
CDDcd002652.78E-39261No hitNo description
SuperFamilySSF554551.44E-31274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014866.6E-95993IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCST  60
SRNLLEEELG SISTKELDQL EHQLDMSLKQ IRYQDSIYAR SAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21160160MEF2C
5f28_B6e-21160160MEF2C
5f28_C6e-21160160MEF2C
5f28_D6e-21160160MEF2C
6byy_A5e-21160160MEF2 CHIMERA
6byy_B5e-21160160MEF2 CHIMERA
6byy_C5e-21160160MEF2 CHIMERA
6byy_D5e-21160160MEF2 CHIMERA
6bz1_A5e-21160160MEF2 CHIMERA
6bz1_B5e-21160160MEF2 CHIMERA
6bz1_C5e-21160160MEF2 CHIMERA
6bz1_D5e-21160160MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802463e-99JX680246.1 Aquilegia coerulea MADS-box protein SEP2B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257958.14e-45PREDICTED: developmental protein SEPALLATA 1
RefseqXP_028059218.14e-45MADS-box protein EJ2-like
SwissprotQ396857e-45CMB1_DIACA; MADS-box protein CMB1
TrEMBLA0A2G5F5F03e-68A0A2G5F5F0_AQUCA; Uncharacterized protein
STRINGAquca_002_00913.15e-69(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-44MIKC_MADS family protein