PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G374000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25123.5 Da    PI: 9.6667
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G374000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtfskRr g+lKKA+E+S+LCdaeva+i+fs++gkl+eys+
  Aqcoe3G374000.2.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISILCDAEVALIVFSTKGKLFEYST 59
                       79***********************************************96 PP
2K-box72.71.1e-2478165491
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                        ++   ++++ + +++ e+ kLk++ie Lq++qRh+ GedLe++slkeLq+LeqqL+++lk+iR++K +   +++ ++   e+ +q +n
  Aqcoe3G374000.2.p  78 RELAGTDSESQGNWSLEYVKLKAKIEILQKNQRHYNGEDLENMSLKELQNLEQQLDSALKQIRARKLKEKEKELAQQTPWEQPNQGQN 165
                        555666778889******************************************************8877777777666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.338161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-34291IPR002100Transcription factor, MADS-box
CDDcd002652.70E-41276No hitNo description
PRINTSPR004042.2E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1885160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.18488177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISILCD AEVALIVFST KGKLFEYSTD  60
SGMDKILERY ERYSYAEREL AGTDSESQGN WSLEYVKLKA KIEILQKNQR HYNGEDLENM  120
SLKELQNLEQ QLDSALKQIR ARKLKEKEKE LAQQTPWEQP NQGQNSSSML ISQTLPSLNI  180
GVNYEARSTR AEEEGTRPQP ARPTTLMPPW MLRHVNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-24184183MEF2 CHIMERA
6byy_B6e-24184183MEF2 CHIMERA
6byy_C6e-24184183MEF2 CHIMERA
6byy_D6e-24184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802520.0JX680252.1 Aquilegia coerulea MADS-box protein FL1A mRNA, complete cds.
GenBankKF5001340.0KF500134.1 Aquilegia coerulea FRUITFULL-like protein (FL1b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260844.11e-110PREDICTED: truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-101AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2G5F5Q51e-158A0A2G5F5Q5_AQUCA; Uncharacterized protein
STRINGAquca_002_00915.11e-149(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]