PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G375000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 386aa MW: 44300.7 Da PI: 9.4521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G375000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.2e-19	12	105	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 fY+eY+++ GFs+r+++ ++ + ++ it+ +vCs+eg +++++ k + + +++++ r++Cka+++v+k+k ++ +evt +e+ H+H Aqcoe3G375000.1.p 12 FYREYGRQEGFSTRIRTIDRKqHGSNMITSCLLVCSREGVHNRKEVKfggISGKPSNTSTVRCECKASMRVTKRKfEEIYEVTMVENTHSHG 103 *************99887725566788999*****9999999988888899999***********9*************9 PP FAR1 89 la 90 l+ Aqcoe3G375000.1.p 104 LV 105 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-16	12	105	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-24	221	304	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MTFKTVDDAK TFYREYGRQE GFSTRIRTID RKQHGSNMIT SCLLVCSREG VHNRKEVKFG 60 GISGKPSNTS TVRCECKASM RVTKRKFEEI YEVTMVENTH SHGLVSPCKR MNMRANKCMP 120 EAAKKLTMVF HDEGLPVAKV VSVFCGDTIG FTAKDCHNHF GSTKKKPKEG DATSVLHYFE 180 KMSAEDPQFY YAIQSDAKGR AVNFFWVDGR SRMQYEYFGD VVSFDTTYRT NAYKMPFAPF 240 TGVNHHLMSI QFGCGLLLDE TEGTFVWLFK TWLAAMGGHK AMTSAVARVF PNTSHRHCLW 300 HITNKFPEKL AHVMHVNENF SEELKLIISG SYRTYDFERK WNEHMVKYKL VDHSWLKGIY 360 EARRTWVPAY HLDTFFAGMN TTGAK*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MTFKTVDDAK TFYREYGRQE GFSTRIRTID RKQHGSNMIT SCLLVCSREG VHNRKEVKFG  60
GISGKPSNTS TVRCECKASM RVTKRKFEEI YEVTMVENTH SHGLVSPCKR MNMRANKCMP  120
EAAKKLTMVF HDEGLPVAKV VSVFCGDTIG FTAKDCHNHF GSTKKKPKEG DATSVLHYFE  180
KMSAEDPQFY YAIQSDAKGR AVNFFWVDGR SRMQYEYFGD VVSFDTTYRT NAYKMPFAPF  240
TGVNHHLMSI QFGCGLLLDE TEGTFVWLFK TWLAAMGGHK AMTSAVARVF PNTSHRHCLW  300
HITNKFPEKL AHVMHVNENF SEELKLIISG SYRTYDFERK WNEHMVKYKL VDHSWLKGIY  360
EARRTWVPAY HLDTFFAGMN TTGAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007208966.2	1e-138	protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5X3A3	1e-137	M5X3A3_PRUPE; Uncharacterized protein
STRING	EMJ13570	1e-138	(Prunus persica)
STRING	EMJ22296	1e-138	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-85	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe3G375000.1.p