PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G375100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 371aa    MW: 42886.1 Da    PI: 7.6167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G375100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-052547123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C++Cg   s ks+L +Hi +H
  Aqcoe3G375100.1.p 25 YYCNYCGIGRSKKSLLASHILSH 47
                       89*******************96 PP
2zf-C2H221.17.9e-076687223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ Cg sF+ + +Lk+H+++H
  Aqcoe3G375100.1.p 66 TCEECGASFTKPAYLKQHMQSH 87
                       6*******************99 PP
3zf-C2H217.51.2e-0593117123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp  dC+ s++rk++L+rH+  H
  Aqcoe3G375100.1.p  93 FACPvdDCHSSYRRKDHLTRHLLQH 117
                        78*******************9887 PP
4zf-C2H217.31.4e-05160184123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk+F+  s L++H  +H
  Aqcoe3G375100.1.p 160 HVCPevGCGKVFKYASRLRHHEESH 184
                        79*******************9988 PP
5zf-C2H214.50.0001251275223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C  +F+ ksnL++Hi+  H
  Aqcoe3G375100.1.p 251 KCSykGCLHTFTKKSNLNQHIKAvH 275
                        688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1822552IPR007087Zinc finger, C2H2
SMARTSM00355132547IPR015880Zinc finger, C2H2-like
SMARTSM003550.00366587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.2746592IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-86686IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.32E-1166117No hitNo description
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-1287119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.59893122IPR007087Zinc finger, C2H2
SMARTSM003550.0193117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576672.56E-5103164No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5120144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538122152IPR007087Zinc finger, C2H2
SMARTSM003550.12122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-7155184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.83E-5156186No hitNo description
SMARTSM003550.0025160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003554.9192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM0035521220241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.25E-6232292No hitNo description
Gene3DG3DSA:3.30.160.607.9E-5233272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489250280IPR007087Zinc finger, C2H2
SMARTSM003550.0062250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-4274301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.58281307IPR007087Zinc finger, C2H2
SMARTSM003552.3281307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEIEGGGRAV ETEKENQIDS NRRRYYCNYC GIGRSKKSLL ASHILSHHKE EMERENDENE  60
ETNSNTCEEC GASFTKPAYL KQHMQSHSSE RPFACPVDDC HSSYRRKDHL TRHLLQHQGK  120
LFSCPVEACN HRFAYQGNMR RHVLEFHDET DYDNESQKQH VCPEVGCGKV FKYASRLRHH  180
EESHVKPDSI EAICCEPGCM KSFSNAECLK AHLLSCHQYI ECEVCGTQQL RKNIKRHMHI  240
HEGGCALERI KCSYKGCLHT FTKKSNLNQH IKAVHLELRP FACRFAGCGK TFPYRHVRDN  300
HENSGIHVYF QGDFEEADEQ FRSRPRGGCK RKCPTIEMLL RKRVTLPGQV DSAWSQASDY  360
FNWLLSESDD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-176921219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-176921219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251839.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251840.10.0PREDICTED: transcription factor IIIA
RefseqXP_010251841.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-131TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F5C10.0A0A2G5F5C1_AQUCA; Uncharacterized protein
STRINGAquca_002_00921.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-123transcription factor IIIA