PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G375100.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 316aa    MW: 36208.1 Da    PI: 8.276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G375100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.6e-063862123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       + Cp  dC+ s++rk++L+rH+  H
  Aqcoe3G375100.2.p 38 FACPvdDCHSSYRRKDHLTRHLLQH 62
                       78*******************9887 PP
2zf-C2H210.70.00166792123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                       ++Cp   C+ +F  + n++rH    H
  Aqcoe3G375100.2.p 67 FSCPveACNHRFAYQGNMRRHVLEfH 92
                       89*******************98777 PP
3zf-C2H217.51.1e-05105129123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk+F+  s L++H  +H
  Aqcoe3G375100.2.p 105 HVCPevGCGKVFKYASRLRHHEESH 129
                        79*******************9988 PP
4zf-C2H214.88.1e-05196220223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C  +F+ ksnL++Hi+  H
  Aqcoe3G375100.2.p 196 KCSykGCLHTFTKKSNLNQHIKAvH 220
                        688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
SuperFamilySSF576673.33E-63564No hitNo description
Gene3DG3DSA:3.30.160.601.8E-83664IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.5983867IPR007087Zinc finger, C2H2
SMARTSM003550.013862IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804062IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-56589IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.07E-56593No hitNo description
SMARTSM003550.126792IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5386797IPR007087Zinc finger, C2H2
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-7100129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512105134IPR007087Zinc finger, C2H2
SMARTSM003550.0025105129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107129IPR007087Zinc finger, C2H2
SMARTSM003554.9137162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
SMARTSM0035521165186IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.04E-7177237No hitNo description
Gene3DG3DSA:3.30.160.607.0E-5178217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0062195220IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489195225IPR007087Zinc finger, C2H2
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-4219246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.3226252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58226252IPR007087Zinc finger, C2H2
PROSITE patternPS000280228252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQRGGIFLLI GLVSGWGTSC EAPSSQPRSR ALFAPRPFAC PVDDCHSSYR RKDHLTRHLL  60
QHQGKLFSCP VEACNHRFAY QGNMRRHVLE FHDETDYDNE SQKQHVCPEV GCGKVFKYAS  120
RLRHHEESHV KPDSIEAICC EPGCMKSFSN AECLKAHLLS CHQYIECEVC GTQQLRKNIK  180
RHMHIHEGGC ALERIKCSYK GCLHTFTKKS NLNQHIKAVH LELRPFACRF AGCGKTFPYR  240
HVRDNHENSG IHVYFQGDFE EADEQFRSRP RGGCKRKCPT IEMLLRKRVT LPGQVDSAWS  300
QASDYFNWLL SESDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-113615741155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-113615741155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-143PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-143PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-143PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-143PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-100TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F5C10.0A0A2G5F5C1_AQUCA; Uncharacterized protein
STRINGAquca_002_00921.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-103transcription factor IIIA