PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G384500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 382aa    MW: 42548.3 Da    PI: 6.0149
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G384500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.23.9e-0959104342
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp+
  Aqcoe3G384500.1.p  59 VWVCEACESAPAAFTCKADAASLCTTCDADIHSAnplarrHHRVPI 104
                        689*****************************66899999877775 PP
2CCT69.77.4e-24312355144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea++lRY+eKrktRkFeK+irY+sRKa+Ae+RpR+KGrF++++
  Aqcoe3G384500.1.p 312 REARVLRYREKRKTRKFEKTIRYASRKAYAETRPRIKGRFARRT 355
                        9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.7E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1681461IPR000315B-box-type zinc finger
CDDcd000211.00E-61761No hitNo description
PROSITE profilePS5011910.86557104IPR000315B-box-type zinc finger
PfamPF006438.2E-758104IPR000315B-box-type zinc finger
CDDcd000211.38E-860104No hitNo description
SMARTSM003361.5E-962104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.857312354IPR010402CCT domain
PfamPF062031.6E-17312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMKKEMRSGS GGGGWSRVCD SCRAAACAVF CRADSAYLCT GCDARMHGAN QLVSRHERVW  60
VCEACESAPA AFTCKADAAS LCTTCDADIH SANPLARRHH RVPILPISGC LYGPSANYPS  120
RPLGSVADME DGFLTSEVGE ELEEDDDETS SWLLLNPVNP VKNSNPSNGF LFGGEDEYLD  180
FEEYNSCTEN QYQDQYKQQQ QQQQNSFSIQ HNQVKNDGND SVVPVQYGTM DQHHHQHNLH  240
LEMDHEASSK PGFNFTTSLT HSVSMSSMDA SIVPDSTMSE TSNMHSRTPK GTIDLFSSPP  300
LQMPAQFSPM DREARVLRYR EKRKTRKFEK TIRYASRKAY AETRPRIKGR FARRTDVEVE  360
VDQMFATSVM AESGYGIVPS F*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1733310.0HQ173331.1 Aquilegia formosa CONSTANS-like protein (CO) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257847.11e-175PREDICTED: zinc finger protein CONSTANS-LIKE 2
RefseqXP_010261698.11e-175PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-130COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2G5F5R90.0A0A2G5F5R9_AQUCA; Uncharacterized protein
STRINGAquca_002_01005.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.13e-89CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]