PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G391000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YB

Protein Properties

Length: 156aa MW: 17176.4 Da PI: 4.376

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G391000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	73.1	4.6e-23	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP a + +i+k +lP++ ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +y e + + Aqcoe3G391000.1.p 11 KEDVTLPKATMFKIIKDMLPKDVRVARDAQDLLVECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYTEDVYA 93 68999*************************************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-36	7	139	IPR009072	Histone-fold
SuperFamily	SSF47113	1.4E-32	12	141	IPR009072	Histone-fold
Pfam	PF00808	2.5E-20	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEAMEIVGKS KEDVTLPKAT MFKIIKDMLP KDVRVARDAQ DLLVECCVEF INLVSSESNE 60 VCSREEKRTI APEHVLKALE VLGFGEYTED VYAAYEQHKL ETLDSPKGGK LSGIAEMTEE 120 EAAAEQQRMF AEARARMNGG VNITKQSELD GSSDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-33	12	134	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841904.1	4e-91	protein Dr1 homolog
Refseq	XP_011622414.1	4e-91	protein Dr1 homolog
Refseq	XP_020521360.1	4e-91	protein Dr1 homolog
Swissprot	P49592	5e-80	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A2G5F684	1e-109	A0A2G5F684_AQUCA; Uncharacterized protein
STRING	Aquca_002_01056.1	1e-110	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.2	1e-64	nuclear factor Y, subunit B12

Link Out ? help Back to Top
Phytozome	Aqcoe3G391000.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]