PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G395700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 358aa MW: 39687.3 Da PI: 6.7225

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G395700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	173	219	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Aqcoe3G395700.1.p 173 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 219 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-12	173	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-15	174	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-15	174	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-13	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.64E-5	183	222	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.5E-6	255	330	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MCGKKEDDGD CSQSIHTLQG YQEQFFLQQQ LQQQQQQQYN DGFLGAGGGV GRGGLLFPEV 60 SPIIPWSFPQ VQAFNPVHFT SNPIRDHDPF LVPPPTSSYG ALFNRRASSL QFAYDGSSSD 120 HHLRILSSDP LGQTGHHHHH HHQSGSTPFG LQSELGKMTA QEIMDAKALA ASKSHSEAER 180 RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSQIAEAS PVPTETDELT 240 VDASDEDGKF IIKASLCCED RSDLLPELIK TLKALRLRTL KAEITTLGGR VKNVLFITGE 300 EEEDSKNNID QQQQAINSIQ EALKAVMERT TGDDSSSGSI KRQRTNINIL DHQQRSL*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MCGKKEDDGD CSQSIHTLQG YQEQFFLQQQ LQQQQQQQYN DGFLGAGGGV GRGGLLFPEV  60
SPIIPWSFPQ VQAFNPVHFT SNPIRDHDPF LVPPPTSSYG ALFNRRASSL QFAYDGSSSD  120
HHLRILSSDP LGQTGHHHHH HHQSGSTPFG LQSELGKMTA QEIMDAKALA ASKSHSEAER  180
RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSQIAEAS PVPTETDELT  240
VDASDEDGKF IIKASLCCED RSDLLPELIK TLKALRLRTL KAEITTLGGR VKNVLFITGE  300
EEEDSKNNID QQQQAINSIQ EALKAVMERT TGDDSSSGSI KRQRTNINIL DHQQRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-42	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-42	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017606084.1	1e-171	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-103	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2G5F6A5	0.0	A0A2G5F6A5_AQUCA; Uncharacterized protein
STRING	Aquca_002_01095.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G395700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]