PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G396000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 496aa    MW: 55501.9 Da    PI: 4.7096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G396000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1059.7e-33581971128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                        lp G++F+P+d+e++++ L+ kv + +      +e++   ++e  +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++     
  Aqcoe3G396000.1.p  58 LPCGVKFDPSDQEIIWHLLA-KVGNGNvkshpfIEEFIPtVNEEgGICYAHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnlg 147
                        699************66555.5555553554332222222444446**********.677888899******************86555555 PP

                NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        + +W++tg++k+v+  +g ++g+kk++v+y    ++ k+ekt+Wvmh+y+l
  Aqcoe3G396000.1.p 148 DVRWHKTGRTKPVIL-DGIQMGCKKIMVLYMStpKSGKPEKTNWVMHQYHL 197
                        889************.99************6523566667*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3943216IPR003441NAC domain
PROSITE profilePS5100530.79558216IPR003441NAC domain
PfamPF023655.7E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSRTSWLVDG RRIATKIKSA SEKCDPKSVN WKSNPSRACP KCNYVIDNTD VVQEWPGLPC  60
GVKFDPSDQE IIWHLLAKVG NGNVKSHPFI EEFIPTVNEE GGICYAHPQN LPGVKQDGSV  120
SHFFHRAIKA YNTGTRKRRK IHGDNLGDVR WHKTGRTKPV ILDGIQMGCK KIMVLYMSTP  180
KSGKPEKTNW VMHQYHLGTG EDEKDGEFVV SKVFYQQQAK IGDKVEEYQS CDISEVIITT  240
TKVDPVTPKS VIPEPRRTGR CQSNAEPGQE GELCVVETFA QSPVMENFDE LPVKELLNYQ  300
HNHTKEDKAN HIVSDDNDNE GDPKALEGQS QYPVPGYLNI HTPEDQEDLM VDDHDDIAED  360
PKLLAGQSQY AFDSQQLSQP LLNTQELLEG ANLCQEFLQS QPSNEEADFS CLGKEVFKKV  420
IEDYRPLGLL DHPNDSGSRM LNPSESVQGA QDSQHDLEEL GNMSQLDLSI DPEFRLSQIE  480
FGSQEFSLGL GASFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026402499.11e-175SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A2G5F6K30.0A0A2G5F6K3_AQUCA; Uncharacterized protein
STRINGAquca_002_01098.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-139NAC family protein