PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G406500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-other

Protein Properties

Length: 217aa MW: 24536.6 Da PI: 8.5121

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G406500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.4e-18	31	81	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eq+ Lee+F+++++p++e+ +++ lg++ +qVk+WFqN+R + k Aqcoe3G406500.1.p 31 RHTPEQIAKLEEYFNRCHNPKEEHQIAISRYLGMEPKQVKFWFQNKRNQVK 81 689********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-15	15	82	IPR009057	Homeodomain-like
SMART	SM00389	8.7E-11	25	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-16	25	83	IPR009057	Homeodomain-like
CDD	cd00086	8.66E-12	30	82	No hit	No description
Pfam	PF00046	5.1E-15	31	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.491	33	83	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	58	81	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSVALGASGG GGDQPPNPAG LGKNNCNHSH RHTPEQIAKL EEYFNRCHNP KEEHQIAISR 60 YLGMEPKQVK FWFQNKRNQV KNALIRREND VFHRENERLQ SSNLALNQTC TLQWEVIRRL 120 NAENERLNME NERVRLANER MRREQVRLLE IVVNLNRELE LLRPQFANLP LNFGPAESVS 180 IPGVALGSST SSSLMNVVSR PSNADDSLNS SVMSTE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	3e-22	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Aqcoe3G406500.1.p