PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G406700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

ZF-HD

Protein Properties

Length: 181aa MW: 19983.2 Da PI: 8.1384

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G406700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.6	8e-30	10	59	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + ++t+++lkCaACgCHRnFHR+ + Aqcoe3G406700.1.p 10 LYRECLRNHAASLGSYATDGCGEFTLD---DTTPDTLKCAACGCHRNFHRKVS 59 6***********************8...778****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.7E-25	10	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.043	11	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-17	11	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-24	11	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.7E-27	92	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.07E-15	92	161	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.8E-27	102	161	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MARDDDLRDL YRECLRNHAA SLGSYATDGC GEFTLDDTTP DTLKCAACGC HRNFHRKVSV 60 SIGSGAGKRG GNGGSFFGRD PDAVDLIEYG AGQSNESERG GKKRIRTKFS VEQKEKMLEF 120 AEKLGWRIKR KDGEEDEIEI FCRSIGVSRQ VFKVWMHNHK NSTSSPSPHF TANVSSSLTQ 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-20	103	165	18	78	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022845031.1	2e-70	zinc-finger homeodomain protein 11-like
Swissprot	Q9SB61	9e-44	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2G5F6Q3	1e-131	A0A2G5F6Q3_AQUCA; Uncharacterized protein
STRING	Aquca_002_01198.1	1e-132	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-43	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Aqcoe3G406700.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]