PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G418400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 666aa    MW: 73089 Da    PI: 4.527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G418400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.92.7e-1362946551374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv++L++cAeav++++l+la++l++++s la +++ +m+++a+yf+eALa+r+++        + p+++ +++ s+ l++   f+e++P lk
  Aqcoe3G418400.1.p 294 LVHTLMACAEAVQQDNLKLAENLVKQISLLAVSQAGAMKKVATYFAEALARRVYG--------FYPQPSLDSSFSDILQI--HFYETCPHLK 375
                        689****************************************************........55666654445555444..5********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaIl++++ ++rvHiiDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+++g++La+fAe+l+++fe++ +va+
  Aqcoe3G418400.1.p 376 FAHFTANQAILDSLADSNRVHIIDFSMKQGIQWPALMQALAMRPNGPPKFRLTGIGPPQPDNTDALQQVGWKLAQFAENLHIEFEYRGFVAN 467
                        ******************************************************************************************** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eakl 275
                        +l+dl+ +++++++gE++aVn+v++lh+ll++s++l++    vL+ +k+++Pk++++veqea+hn+++F +rf+eal+yys+lfdsl    l
  Aqcoe3G418400.1.p 468 SLADLDASMFDLRHGETVAVNSVFELHQLLAQSGALNK----VLSSIKDMKPKIITIVEQEANHNGPNFIDRFTEALHYYSSLFDSLeGYPL 555
                        **************************************....*********************************************77889 PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                        ++ s+++  ++++++gr+i+n+v+ceg +r+erhe l++Wr+rle+aGF+  +l++++  q+++ll +++ + gy+vee++g+l+lgW++rp
  Aqcoe3G418400.1.p 556 SPLSNQDLIMSEMYFGRQICNIVSCEGVDRTERHECLNQWRNRLESAGFSLSHLGSNTFRQVNSLLTMFDaGSGYNVEENNGCLLLGWHTRP 647
                        9******************************************************************************************* PP

               GRAS 367 LvsvSaWr 374
                        Lv+ SaW+
  Aqcoe3G418400.1.p 648 LVASSAWQ 655
                        *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.5E-2674143IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.0E-2074153No hitNo description
PROSITE profilePS5098565.123268634IPR005202Transcription factor GRAS
PfamPF035149.2E-134294655IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MKRTLHHHQE NGEGGNNSGA GGGGEPAAAS ASASAAGYSM ETTGNSLVDL GKTKMMCWEE  60
DQDCFQQQQD AGDDELLAMM GYNVKYTEMA DVAQKIEQLE MKMMNCSSSA QEDNVFVSHL  120
GSETVHFNPS DMSTWLENML SEVGELTLPP NFDTCSLNDI LNNSTTTTTT NKSPFQSIVD  180
ENLFIPPAES SSTTINVSNL IIDPPQIYTE EPNSLLSDYD LGVIPGEAAI YGTCSGSNGE  240
RENKRIKHEE ILLPPASSPV SAIVNAPPAQ VVSINESIRP VVLMDSSQEN GIRLVHTLMA  300
CAEAVQQDNL KLAENLVKQI SLLAVSQAGA MKKVATYFAE ALARRVYGFY PQPSLDSSFS  360
DILQIHFYET CPHLKFAHFT ANQAILDSLA DSNRVHIIDF SMKQGIQWPA LMQALAMRPN  420
GPPKFRLTGI GPPQPDNTDA LQQVGWKLAQ FAENLHIEFE YRGFVANSLA DLDASMFDLR  480
HGETVAVNSV FELHQLLAQS GALNKVLSSI KDMKPKIITI VEQEANHNGP NFIDRFTEAL  540
HYYSSLFDSL EGYPLSPLSN QDLIMSEMYF GRQICNIVSC EGVDRTERHE CLNQWRNRLE  600
SAGFSLSHLG SNTFRQVNSL LTMFDAGSGY NVEENNGCLL LGWHTRPLVA SSAWQIGSSI  660
KSECN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6428965413377Protein SCARECROW
5b3h_D2e-6428965413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274729.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2G5F7G90.0A0A2G5F7G9_AQUCA; Uncharacterized protein
STRINGAquca_002_01300.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein