PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G421100.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 331aa    MW: 38067 Da    PI: 7.8207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G421100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-076889223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ Cg sF+ + +Lk+H+++H
  Aqcoe3G421100.2.p 68 TCEECGASFRKPAYLKQHMQSH 89
                       6*******************99 PP
2zf-C2H215.16.5e-0595119123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y C+  dC+ s++r ++L+rH+  H
  Aqcoe3G421100.2.p  95 YACTvdDCHSSYKREDHLTRHLLQH 119
                        889999***************9887 PP
3zf-C2H211.40.00098124149123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++Cp   C+ +F   +n+krH    H
  Aqcoe3G421100.2.p 124 FSCPveGCTSRFAYLDNMKRHVIElH 149
                        89*******************98766 PP
4zf-C2H217.51.1e-05166189223
                        EET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        +Cp   Cgk+F+  s L++H  +H
  Aqcoe3G421100.2.p 166 VCPevGCGKVFRYASRLRKHEESH 189
                        7*******************9988 PP
5zf-C2H211.30.0011200222323
                        ET.TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 Cp.dCgksFsrksnLkrHirt.H 23 
                        C+  C ksFs+ + Lk H+++ H
  Aqcoe3G421100.2.p 200 CEpGCWKSFSNIECLKAHLQSsH 222
                        678****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355242244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5686794IPR007087Zinc finger, C2H2
SMARTSM003550.00396789IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-86788IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576672.36E-1075128No hitNo description
Gene3DG3DSA:3.30.160.601.5E-1189121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02495119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6495124IPR007087Zinc finger, C2H2
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-5122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-5122150No hitNo description
SMARTSM003550.035124149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-7162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0023165189IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45165194IPR007087Zinc finger, C2H2
PROSITE patternPS000280167189IPR007087Zinc finger, C2H2
SMARTSM003550.51197222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199222IPR007087Zinc finger, C2H2
SMARTSM0035512225246IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEGREREEAE KRKPIGKDIR RYYCQYCGIG RSKKALINSH ILSHHKEEIE REKENCEYNE  60
MEETKSNTCE ECGASFRKPA YLKQHMQSHS FERPYACTVD DCHSSYKRED HLTRHLLQHQ  120
GKLFSCPVEG CTSRFAYLDN MKRHVIELHD ETDSDSCDSS VQKQLVCPEV GCGKVFRYAS  180
RLRKHEESHV KLDSVEAICC EPGCWKSFSN IECLKAHLQS SHLYINCEVC GTQQLKKNIK  240
RHMRIHEAGY TSHRIKCSFK GCLHTFATGD FEEADAQFQS RPRGGKKRKY PTVEMLLRKR  300
VVPPGQADST SCQGSEYLAW LLSASDEDGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-157121719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-157121719155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280288RPRGGKKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251838.11e-146PREDICTED: transcription factor IIIA
RefseqXP_010251839.11e-146PREDICTED: transcription factor IIIA
RefseqXP_010251840.11e-146PREDICTED: transcription factor IIIA
RefseqXP_010251841.11e-146PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-103TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F7C60.0A0A2G5F7C6_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-101transcription factor IIIA