PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G421300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 512aa MW: 55924 Da PI: 6.092

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G421300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Aqcoe3G421300.2.p 60 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	54	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.476	55	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.1E-17	58	107	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-13	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-14	60	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-9	60	100	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-10	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MDVQNQGERT SLSTVAASSN QMSMDTDSQP GTANEFQEIY TAGEENAPKA RKPYTITKQR 60 ERWTEEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR ESNNTDASPV 120 KPIEIPPPRP KRKPMHPYPR KMVHTVNKRV SVSHQPERSP SPNSSGSEQE NQSPKSVISA 180 LGSDTMDSTV SNNENGSQSP VSSDDVAKPA TILTPITVNR CQSSNSSTKE ENGSPTSVLA 240 TSGPTAQDQS SMKLDFGTKD DALKDEFPSL EAPTVSLKLF GRTVLVTDSH RPSSSLGGAG 300 KPLAAERFQE STDTDEAGPA KTFQQDSKDN VCSMESSAST WSSWPHGNPS MFYQIQLQNE 360 NSHPVEGASV VPMPWWALQG CLPFPIVPSF NLISGQIPPD ACLREASEER GAEDKEGSWA 420 GSSTSSGSEL EAVDKCGDVA DSSNQELSLD KNLCQGFVLK PSKRSAFSPL RANPNKCIKG 480 FVPYKRCLAE REDQSIIVCE ERDGQRIRLC S*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MDVQNQGERT SLSTVAASSN QMSMDTDSQP GTANEFQEIY TAGEENAPKA RKPYTITKQR  60
ERWTEEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR ESNNTDASPV  120
KPIEIPPPRP KRKPMHPYPR KMVHTVNKRV SVSHQPERSP SPNSSGSEQE NQSPKSVISA  180
LGSDTMDSTV SNNENGSQSP VSSDDVAKPA TILTPITVNR CQSSNSSTKE ENGSPTSVLA  240
TSGPTAQDQS SMKLDFGTKD DALKDEFPSL EAPTVSLKLF GRTVLVTDSH RPSSSLGGAG  300
KPLAAERFQE STDTDEAGPA KTFQQDSKDN VCSMESSAST WSSWPHGNPS MFYQIQLQNE  360
NSHPVEGASV VPMPWWALQG CLPFPIVPSF NLISGQIPPD ACLREASEER GAEDKEGSWA  420
GSSTSSGSEL EAVDKCGDVA DSSNQELSLD KNLCQGFVLK PSKRSAFSPL RANPNKCIKG  480
FVPYKRCLAE REDQSIIVCE ERDGQRIRLC S*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246196.1	1e-169	PREDICTED: protein REVEILLE 1
Swissprot	F4KGY6	4e-53	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A2G5F7C7	0.0	A0A2G5F7C7_AQUCA; Uncharacterized protein
STRING	Aquca_002_01329.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-45	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G421300.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]