PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe3G433800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 155aa MW: 17504.2 Da PI: 9.4774

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G433800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80	1.6e-25	18	66	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ie++s+r+vtfskRr+g++KKA+EL++LC+a++a+i+ s+++k+y++ Aqcoe3G433800.1.p 18 EKIESSSQRYVTFSKRRTGLFKKASELCILCGADIAIIVSSPSQKIYTF 66 57**********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.698	10	70	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-30	10	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-28	11	100	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.32E-31	11	80	No hit	No description
PRINTS	PR00404	2.0E-18	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-25	19	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	47	68	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDLTRKKRGT GRKKVPIEKI ESSSQRYVTF SKRRTGLFKK ASELCILCGA DIAIIVSSPS 60 QKIYTFGHPS VDSVVDRFLN QDDHHMSALG HDQQQQQIQY IEILGQLEAE KKRGEIIEQL 120 KPSGWDAPID SLQLQELQQM KQALVELKKK VLGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3kov_B	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3kov_I	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3kov_J	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_A	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_B	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_C	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_D	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_I	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
3p57_J	2e-14	11	92	1	82	Myocyte-specific enhancer factor 2A
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026442040.1	7e-48	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	5e-41	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A2G5F862	1e-108	A0A2G5F862_AQUCA; Uncharacterized protein
STRING	Aquca_002_01450.1	1e-109	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-34	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Aqcoe3G433800.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]