PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G440000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 565aa    MW: 62810.1 Da    PI: 5.1961
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G440000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16400496295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +k+l + dv+++gr+vlpkk ae++  +++ + +  l++ed   + +W++k++y  ++ks++yv++ ++ +Fv+ ++L++gDf++ +  ++ 
  Aqcoe3G440000.1.p 400 QKELRNTDVGNLGRIVLPKKEAEANlpQLVAKDGLILQMEDmIFSIKWKFKYRYwpNNKSRMYVME-NTGDFVRTHNLQTGDFFIVY--KEk 488
                        68999**********************999889989999998888*********888888889988.******************99..333 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        s++++ v+
  Aqcoe3G440000.1.p 489 SSGKYIVR 496
                        88877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-24392499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-18397493IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-13399501IPR003340B3 DNA binding domain
PROSITE profilePS508639.079399501IPR003340B3 DNA binding domain
CDDcd100179.38E-21400496No hitNo description
PfamPF023629.5E-13400496IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSMLLSSSSS SSTTTTTSSF GFPMNEARVK TSSPSSPTAQ TNLSLFSSLL SNSDEDDDLV  60
EKKQNIDPNR ERLINEPIQR ENPFPSLFSA PAATVAEYPS MYYLPNFQSG GDNVINSDQS  120
TTDGQNVAAA PFPVMNSQQG FVRVGNDLTP IFPGLNSSWV PQPVGNPYQY CCFPYNTMCA  180
VPPNLKEKTD DAWISQDPQQ MESQFGHIPG SFYQESVFHG NFLPFQAMLQ NPYFPTPVRD  240
TPSSCPLSSF ITKSQEVGAC ATSRGSRDDY PYVPKPIRGP VLNYTDSATF TDKEEANDNS  300
IDGSSLMPIH KRKLDGPSNM NNTSNTSPLE GKNNENLEPS ARHVIPRWME TNAAEAIQSM  360
RSSRVSTSAE PQSRYPTAAD SYKLEEEKEI EGKDWVLLVQ KELRNTDVGN LGRIVLPKKE  420
AEANLPQLVA KDGLILQMED MIFSIKWKFK YRYWPNNKSR MYVMENTGDF VRTHNLQTGD  480
FFIVYKEKSS GKYIVRGKKG VKSNGDCGKP EEGETEVKKQ LSKRRALLSA NGNVDVKSEN  540
GAFAAWERFS LEENNGSSQF IKPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-353975003106B3 domain-containing transcription factor FUS3
6j9b_D7e-353975003106B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CVU50.0A0A2G5CVU5_AQUCA; Uncharacterized protein
STRINGAquca_035_00050.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-38B3 family protein