PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G440000.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 542aa    MW: 60496.5 Da    PI: 5.1961
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G440000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16377473295
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        +k+l + dv+++gr+vlpkk ae++  +++ + +  l++ed   + +W++k++y  ++ks++yv++ ++ +Fv+ ++L++gDf++ +  ++ 
  Aqcoe3G440000.3.p 377 QKELRNTDVGNLGRIVLPKKEAEANlpQLVAKDGLILQMEDmIFSIKWKFKYRYwpNNKSRMYVME-NTGDFVRTHNLQTGDFFIVY--KEk 465
                        68999**********************999889989999998888*********888888889988.******************99..333 PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        s++++ v+
  Aqcoe3G440000.3.p 466 SSGKYIVR 473
                        88877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-24369476IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18374470IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.079376478IPR003340B3 DNA binding domain
SMARTSM010196.7E-13376478IPR003340B3 DNA binding domain
PfamPF023628.9E-13377473IPR003340B3 DNA binding domain
CDDcd100178.34E-21377473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNEARVKTSS PSSPTAQTNL SLFSSLLSNS DEDDDLVEKK QNIDPNRERL INEPIQRENP  60
FPSLFSAPAA TVAEYPSMYY LPNFQSGGDN VINSDQSTTD GQNVAAAPFP VMNSQQGFVR  120
VGNDLTPIFP GLNSSWVPQP VGNPYQYCCF PYNTMCAVPP NLKEKTDDAW ISQDPQQMES  180
QFGHIPGSFY QESVFHGNFL PFQAMLQNPY FPTPVRDTPS SCPLSSFITK SQEVGACATS  240
RGSRDDYPYV PKPIRGPVLN YTDSATFTDK EEANDNSIDG SSLMPIHKRK LDGPSNMNNT  300
SNTSPLEGKN NENLEPSARH VIPRWMETNA AEAIQSMRSS RVSTSAEPQS RYPTAADSYK  360
LEEEKEIEGK DWVLLVQKEL RNTDVGNLGR IVLPKKEAEA NLPQLVAKDG LILQMEDMIF  420
SIKWKFKYRY WPNNKSRMYV MENTGDFVRT HNLQTGDFFI VYKEKSSGKY IVRGKKGVKS  480
NGDCGKPEEG ETEVKKQLSK RRALLSANGN VDVKSENGAF AAWERFSLEE NNGSSQFIKP  540
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-353744773106B3 domain-containing transcription factor FUS3
6j9b_D6e-353744773106B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CVU50.0A0A2G5CVU5_AQUCA; Uncharacterized protein
STRINGAquca_035_00050.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-39B3 family protein