PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G024000.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27087.9 Da    PI: 9.2009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G024000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyeys+
  Aqcoe4G024000.3.p  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSN 59
                       79***********************************************95 PP
2K-box95.96.3e-3279169999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +  +++ qqe++kL ++i +Lq+ +R+l+Ge+L++L+++eL+q+e+++e +++kiR+kKnell+++ie++qk+e +lq +nk+Lr++++
  Aqcoe4G024000.3.p  79 SGSVSEANAQQEATKLCNQIASLQNHNRKLVGESLSNLNIRELKQIEKKIEGGISKIRAKKNELLFAEIEYMQKRELDLQTDNKYLRAMIA 169
                        3444567899*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-33275IPR002100Transcription factor, MADS-box
CDDcd002651.98E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2483168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.47584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSS RGRLYEYSNN  60
SVKKTIERYK KACTDSTNSG SVSEANAQQE ATKLCNQIAS LQNHNRKLVG ESLSNLNIRE  120
LKQIEKKIEG GISKIRAKKN ELLFAEIEYM QKRELDLQTD NKYLRAMIAA NERAPEHMNL  180
MPANEYHALS SAPFDSRNFM PANLLDHNNN YSRSDQTTLQ LGFCESFCCP LSLSLPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-20169169Myocyte-specific enhancer factor 2B
1tqe_R2e-20169169Myocyte-specific enhancer factor 2B
1tqe_S2e-20169169Myocyte-specific enhancer factor 2B
5f28_A2e-20169169MEF2C
5f28_B2e-20169169MEF2C
5f28_C2e-20169169MEF2C
5f28_D2e-20169169MEF2C
6c9l_A2e-20169169Myocyte-specific enhancer factor 2B
6c9l_B2e-20169169Myocyte-specific enhancer factor 2B
6c9l_C2e-20169169Myocyte-specific enhancer factor 2B
6c9l_D2e-20169169Myocyte-specific enhancer factor 2B
6c9l_E2e-20169169Myocyte-specific enhancer factor 2B
6c9l_F2e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4641110.0AY464111.1 Aquilegia alpina AGAMOUS-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268105.11e-114agamous-like MADS-box protein MADS1
RefseqXP_010656929.11e-114PREDICTED: MAD-box transcripion factor isoform X5
SwissprotQ93XH41e-115MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2G5C1041e-157A0A2G5C104_AQUCA; Uncharacterized protein
STRINGAquca_136_00009.11e-156(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.15e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]