PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G024100.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19531.4 Da    PI: 10.413
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G024100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyeys+
  Aqcoe4G024100.3.p  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSN 59
                       79***********************************************95 PP
2K-box94.51.7e-3178160587
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                        ++ s++ea+a+ +qqe++kL+++i +Lq+ +R+llGe+L++L++++L+ +e+++e +++kiR+kKnell+++ie++qk+ + +
  Aqcoe4G024100.3.p  78 NSGSVSEANAQFYQQEVTKLRNQIASLQNHNRNLLGESLSNLNIRDLKPIEKKIEGGISKIRAKKNELLFAEIEYMQKRVNIA 160
                        33449*************************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-33275IPR002100Transcription factor, MADS-box
CDDcd002651.16E-42276No hitNo description
PRINTSPR004041.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2285161IPR002487Transcription factor, K-box
PROSITE profilePS5129712.14787171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSS RGRLYEYSNN  60
SVKKTIERYK KACTDSTNSG SVSEANAQFY QQEVTKLRNQ IASLQNHNRN LLGESLSNLN  120
IRDLKPIEKK IEGGISKIRA KKNELLFAEI EYMQKRVNIA SKSSLNVGHL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-21169169Myocyte-specific enhancer factor 2B
1tqe_R2e-21169169Myocyte-specific enhancer factor 2B
1tqe_S2e-21169169Myocyte-specific enhancer factor 2B
5f28_A2e-21169169MEF2C
5f28_B2e-21169169MEF2C
5f28_C2e-21169169MEF2C
5f28_D2e-21169169MEF2C
6byy_C3e-21169169MEF2 CHIMERA
6byy_D3e-21169169MEF2 CHIMERA
6bz1_A3e-21169169MEF2 CHIMERA
6bz1_B3e-21169169MEF2 CHIMERA
6bz1_C3e-21169169MEF2 CHIMERA
6bz1_D3e-21169169MEF2 CHIMERA
6c9l_A2e-21169169Myocyte-specific enhancer factor 2B
6c9l_B2e-21169169Myocyte-specific enhancer factor 2B
6c9l_C2e-21169169Myocyte-specific enhancer factor 2B
6c9l_D2e-21169169Myocyte-specific enhancer factor 2B
6c9l_E2e-21169169Myocyte-specific enhancer factor 2B
6c9l_F2e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4641110.0AY464111.1 Aquilegia alpina AGAMOUS-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233177.13e-92PREDICTED: floral homeotic protein AGAMOUS isoform X1
SwissprotQ408854e-93AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A2G5C1131e-119A0A2G5C113_AQUCA; Uncharacterized protein
STRINGAquca_136_00010.11e-107(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.19e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]