PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G028900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 618aa    MW: 72193.2 Da    PI: 8.2888
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G028900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07410442237
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                          WT+eE ell + ++++G++ Wk  a++ g  +++
  Aqcoe4G028900.1.p 410 REWTPEEKELLRKFHEEHGSD-WKNFAAEYG--KSR 442
                        68*******************.**9999998..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-4335406IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6338424IPR009057Homeodomain-like
PROSITE profilePS500907.364404453IPR017877Myb-like domain
SMARTSM007170.0022408455IPR001005SANT/Myb domain
SuperFamilySSF466892.14E-8409470IPR009057Homeodomain-like
CDDcd001670.0077411440No hitNo description
PfamPF139218.8E-10412470No hitNo description
Gene3DG3DSA:1.10.10.601.1E-8425464IPR009057Homeodomain-like
PROSITE profilePS500907.991454522IPR017877Myb-like domain
SMARTSM007170.014458524IPR001005SANT/Myb domain
CDDcd001670.00784462519No hitNo description
Gene3DG3DSA:1.10.10.601.8E-7465522IPR009057Homeodomain-like
SuperFamilySSF466891.14E-6502580IPR009057Homeodomain-like
PROSITE profilePS500906.876524577IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MGMGVEGEED LVITKEKKSK KKKMSDNENG LFDEEVEGFK GEDLKDDDKK KKSKKKKMRD  60
NENGLFDEEV EGIKGEDLKD DDKKKKKREK KEKKKNKGSN LQEVNGEGED LKVDDKKKKK  120
REKKEKKKNK GSDLQEVNGE GEEQVLEKEY SLGLNDEEKK KLKSEKREKK EKKNKGNDMT  180
VNGEELVGEK GIGETNVSRK RKLVSEEHVE EQRNDSELGV LKKEKKRKKE KKEKDKGSSD  240
VDESMRKKAN SVKDVEDKKV NEGESTTKDK EDGVDCSGNP ESKKPSKRVK FSKNIEVFPL  300
SDEDLDPGKK TSNPRKKRVD RGSTDVNRDK KDSNHGKRFT KEEDCIIQNA VLNYIKEHDL  360
GDNGLEKILH CQDHPEVKNC WKEIATCMDW RSKTSIYSRA HILFERAEKR EWTPEEKELL  420
RKFHEEHGSD WKNFAAEYGK SRIHTKDTWR RICLPNHKKG HWSQDEYQKL FDLVNMDLLM  480
KVYDEKKSKH GMLRDNISWE AISQRLSTRT MAECCTKWYY QLESPLIRAE LWANTDDILM  540
LNALNERDFS SEEEVDWDNL LEHRSGDLCR KRWQQMVKHL GEHGLKEFAD QVETLANRYS  600
VDVLEARKIY QEKTPVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123KKKKKREKK
2115127KKKKKREKKEKKK
3116123KKKKREKK
4224228KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682330.11e-139PREDICTED: DNA-binding protein REB1-like isoform X1
RefseqXP_010682331.11e-139PREDICTED: DNA-binding protein REB1-like isoform X1
RefseqXP_010682332.11e-139PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X2
TrEMBLA0A2G5CRU60.0A0A2G5CRU6_AQUCA; Uncharacterized protein
STRINGAquca_039_00038.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-102MYB_related family protein