PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G031400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

WRKY

Protein Properties

Length: 282aa MW: 31449.1 Da PI: 5.0079

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G031400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.7e-30	76	134	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp +++itY eHnh+ Aqcoe4G031400.1.p 76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPGMLVITYACEHNHS 134 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	31.307	70	136	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	8.8E-31	71	136	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	73	136	IPR003657	WRKY domain
SMART	SM00774	3.9E-35	75	135	IPR003657	WRKY domain
Pfam	PF03106	5.8E-25	77	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDGRFSHPFV KGDKEDPRFI LEVSDSPPFS GVVNDEKFTP TPSPRKSRRA LQKRVVSVPI 60 GYVDGSRLKG EGAPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRLDP 120 GMLVITYACE HNHSWPTSKT SNQTPKSTTS TGSDLEKSLP QEPTSLPAQP KPEPEIEPEV 180 EPECQFSGLV EDPLMTSNDF SWFADVASTS PTMFESQFYS GNVTDDTDMA MIFAMREEDE 240 SLFADLGELP ECSVVFRRGF IEKEEEHRRC NLRASLCEST G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-20	53	137	6	80	Disease resistance protein RRS1
5w3x_D	6e-20	53	137	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ102364	6e-41	DQ102364.1 Capsicum annuum WRKY-A1244 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248362.1	1e-112	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q9LP56	8e-66	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A2G5CRJ7	0.0	A0A2G5CRJ7_AQUCA; Uncharacterized protein
STRING	Aquca_039_00057.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	9e-69	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Phytozome	Aqcoe4G031400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]