PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G041900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 206aa    MW: 24247 Da    PI: 8.5874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G041900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-102662642
                       HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       +  r+ ++ +R+n + KK  ELS LC+++++ ii+s+
  Aqcoe4G041900.1.p 26 HVARKNSYRRRKNNLVKKVDELSKLCAVKACAIIYSP 62
                       567899******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.9281361IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-91372IPR002100Transcription factor, MADS-box
CDDcd002662.88E-161574No hitNo description
SuperFamilySSF554559.16E-1615106IPR002100Transcription factor, MADS-box
PfamPF003192.3E-102563IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVSRSRSSSL PLNLKKKVKL AWMRDHVARK NSYRRRKNNL VKKVDELSKL CAVKACAIIY  60
SPYDPIPSVW PSNDEAHRLF LQFLTLPDNM QTKKLFNLEF FLKEEIVKLE GKLERAEKSE  120
HEEKMIDLIM RSANGDVLRG LKHEDVQDME CYIEQRMKEI YERGNEQPNL GYYYRMVNDP  180
IEANQFQPVL VDMTMDHSHV QEPRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11436KKKVKLAWMRDHVARKNSYRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802390.0JX680239.1 Aquilegia coerulea MADS-box protein AGL82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CRX71e-151A0A2G5CRX7_AQUCA; Uncharacterized protein
STRINGAquca_039_00138.11e-152(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-26AGAMOUS-like 80