PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G042000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 206aa    MW: 24294.1 Da    PI: 9.8849
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G042000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.12.7e-092562542
                       SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       ++  r  ++ kR++ + KK  EL  LCd++++ ii+ +
  Aqcoe4G042000.1.p 25 DHVARRNSYRKRKTNLVKKMDELTKLCDVKACSIIYNP 62
                       5667889****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-101372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.8391361IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-1815106IPR002100Transcription factor, MADS-box
CDDcd002667.54E-181594No hitNo description
PfamPF003191.3E-102463IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSSSRSSSL PHNPRKKVKL AWMQDHVARR NSYRKRKTNL VKKMDELTKL CDVKACSIIY  60
NPYNPEPSVW PSSDEARRLL LQFLTLPDYK QTRKHFNLEY FLKQQIVKLE GKLERAKKSK  120
REEEIIDLIM RSANDEVLHG LKHENVLGMK CYIGRKMKEI YERGYEQTNH GYYGRMVNDP  180
MEAKQFQEVL LDMTMDHSRV QEPPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11436RKKVKLAWMQDHVARRNSYRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CS061e-152A0A2G5CS06_AQUCA; Uncharacterized protein
STRINGAquca_039_00139.11e-153(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-25AGAMOUS-like 80