PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G042100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20411.7 Da    PI: 10.0228
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G042100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.8e-132662642
                       HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       +  r+ +++kR+n + KK  ELS LCd++++ ii+s+
  Aqcoe4G042100.1.p 26 HVARKNSYIKRKNNLVKKVDELSNLCDVKACAIIYSP 62
                       567999******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.9371361IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-131372IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-1815106IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-51535IPR002100Transcription factor, MADS-box
CDDcd002662.44E-161887No hitNo description
PfamPF003194.8E-122563IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-53550IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-55071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSSRSRSSSL PLSLKKKVKL AWMRDHVARK NSYIKRKNNL VKKVDELSNL CDVKACAIIY  60
SPYDPVPSVW PSNDEARRLL LQFLTLPDNM QTKKLFNLED FLKQQIVKLE GKLKRAKENE  120
REEEMINLIM RSANGEILHG IKHEDVLDME RYIEQRMKKI YERGNEQPNL GYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802391e-164JX680239.1 Aquilegia coerulea MADS-box protein AGL82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CRX78e-98A0A2G5CRX7_AQUCA; Uncharacterized protein
STRINGAquca_039_00138.11e-98(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-28AGAMOUS-like 80