PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G071700.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 66aa MW: 7229.36 Da PI: 8.502

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G071700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	48	62	2	16
EETTTTEEESSHHHH CS zf-C2H2 2 kCpdCgksFsrksnL 16 +C +C++sFs+ ++ Aqcoe4G071700.2.p 48 SCRICNESFSTTVDY 62 6*********98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57783	2.89E-19	1	64	No hit	No description
Pfam	PF05129	4.6E-20	2	64	IPR007808	Transcription elongation factor 1

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGKRKSTAKP PPKKRMDKLD TVFSCPFCNH GTGVECRIDM KNLIGEASCR ICNESFSTTV 60 DYVDA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir9_M	7e-14	1	63	4	66	Transcription elongation factor 1 homolog
6j4w_M	7e-14	1	63	4	66	Transcription elongation factor 1 homolog
6j4x_M	7e-14	1	63	4	66	Transcription elongation factor 1 homolog
6j4y_M	7e-14	1	63	4	66	Transcription elongation factor 1 homolog
6j51_M	7e-14	1	63	4	66	Transcription elongation factor 1 homolog
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002277951.1	1e-36	PREDICTED: transcription elongation factor 1 homolog isoform X1
Refseq	XP_010655469.1	1e-36	PREDICTED: transcription elongation factor 1 homolog isoform X1
Refseq	XP_010655470.1	5e-37	PREDICTED: transcription elongation factor 1 homolog isoform X2
Swissprot	Q8LHP0	2e-36	ELOF1_ORYSJ; Transcription elongation factor 1 homolog
TrEMBL	A0A2G5CIZ7	8e-38	A0A2G5CIZ7_AQUCA; Transcription elongation factor 1 homolog
STRING	Aquca_051_00072.1	1e-38	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe4G071700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]