PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G076900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 291aa MW: 32746.5 Da PI: 8.3744

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G076900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.9e-33	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 lp+G++F+Ptd+e+ e+L+ kv+++ + + +i+ +i++++P++Lp ++++ +fF++ +k+y+tg+rk+r+++ Aqcoe4G076900.1.p 59 LPAGVKFDPTDQEIF-EHLEGKVRSDIlklhplI---DefipTIEGDdGICYTHPEKLP-GANKDGLIRHFFHRPSKAYTTGTRKRRKVQtd 145 799********99.99**9995554332...133333555545******.444445567**************74445 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Aqcoe4G076900.1.p 146 ddgsETRWHKTGKTRPVFV-GGKLKGHKKILVLYsnYGKQRKPEKTNWVMHQYHL 199 6555788********.9*********6557999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-37	54	218	IPR003441	NAC domain
PROSITE profile	PS51005	32.56	59	218	IPR003441	NAC domain
Pfam	PF02365	9.0E-15	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAWCNDDDTN DNTAVERRSA SSRHVNDEKS EAKHTKACPS CGHLIQCQDQ GGIQNLPGLP 60 AGVKFDPTDQ EIFEHLEGKV RSDILKLHPL IDEFIPTIEG DDGICYTHPE KLPGANKDGL 120 IRHFFHRPSK AYTTGTRKRR KVQTDDDGSE TRWHKTGKTR PVFVGGKLKG HKKILVLYSN 180 YGKQRKPEKT NWVMHQYHLG NSEEEKDGEL VVSKVFYQTQ PRQCSSGVKD LLPNSSKRQS 240 GEVNPTLNNS SLVEYYNSSV VNYDQIGHTR ASQHQMTNFV VHGDGSSFMR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278661.1	1e-147	PREDICTED: NAC domain-containing protein 73 isoform X2
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2G5CK86	0.0	A0A2G5CK86_AQUCA; Uncharacterized protein
STRING	Aquca_051_00040.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-119	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Aqcoe4G076900.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]