PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G084200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 206aa    MW: 24117.9 Da    PI: 9.503
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G084200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-1032621242
                       HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifss 42
                       ++ kR+n + KK  E+S LCd++++ ii+s+
  Aqcoe4G084200.1.p 32 SYRKRKNNLVKKVDEVSKLCDVKACAIIYSP 62
                       899***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-101372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.3811361IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-1615106IPR002100Transcription factor, MADS-box
PfamPF003197.8E-102763IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSRSRSSSL LVSLKKKVKL TWMRDHVALK NSYRKRKNNL VKKVDEVSKL CDVKACAIIY  60
SPYDPIPSVW PSNDEARRLI LQFLTLPDNT QTKNLFNLEL FLKQQIVKLE GKLKRAKENE  120
REEEMIDLIM RSTNGEVLHG LKHEDVLDME HYIEQRMKKI YERGNEQPNL GYYGRMVNDP  180
IEANQFQPML VNMTMDHSHV QEPRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11436KKKVKLTWMRDHVALKNSYRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802390.0JX680239.1 Aquilegia coerulea MADS-box protein AGL82 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CRX71e-120A0A2G5CRX7_AQUCA; Uncharacterized protein
STRINGAquca_039_00138.11e-121(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-26AGAMOUS-like 80