PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G084300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 21624.1 Da PI: 10.0273

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G084300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.4	2.1e-09	25	62	5	42
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++ r+ ++ kR++ + KK EL LCd++++ ii+ + Aqcoe4G084300.1.p 25 DHVARKNSYRKRKTNLVKKMDELTKLCDVKACSIIYNP 62 5677999***************************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.713	13	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-9	13	72	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-17	15	106	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.15E-17	15	94	No hit	No description
Pfam	PF00319	1.0E-10	24	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSSGSRSFSL PHNPRKKVKL GWMQDHVARK NSYRKRKTNL VKKMDELTKL CDVKACSIIY 60 NPYDLEPSVW PSSDEARRLV LRFLTFPDYK QTRKLFNLEY FLKQQIVKLE GKLKRVTKSK 120 REEEIIDLIM RSANGQVLDG LKYEDVLGME CYIGRKMKEI YERGYEQPNH GYYGRMVNDP 180 MDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	36	RKKVKLGWMQDHVARKNSYRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CS06	1e-111	A0A2G5CS06_AQUCA; Uncharacterized protein
STRING	Aquca_039_00139.1	1e-112	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-25	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Aqcoe4G084300.1.p