PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G085000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 733aa    MW: 84481.1 Da    PI: 8.2573
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G085000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.27.7e-2068157291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g r+ + ++ ++++++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe4G085000.1.p  68 FYNEYAKFKGFSVRKDHKTVI--DGRTRRRRFICSCAGVRAGKWTNlHKRRKKARRLTRCNCPAAMNIVYDDeLNMWTVRGFISQHNHVLAP 157
                        9**************986665..999***************99988677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1768157IPR004330FAR1 DNA binding domain
PfamPF105515.0E-36249343IPR018289MULE transposase domain
PROSITE profilePS5096610.806527563IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6538565IPR006564Zinc finger, PMZ-type
PfamPF044344.4E-6539561IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LYKVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKFKGFSV RKDHKTVIDG RTRRRRFICS CAGVRAGKWT NLHKRRKKAR  120
RLTRCNCPAA MNIVYDDELN MWTVRGFISQ HNHVLAPPGG SHFLRSHRKS GSHAAAGCTA  180
RDLYNQMNRA RVERIIDGDA NLVNSFLEDM NVRDPGFFKK IQVNEKKQLT KLFWSDSQSQ  240
EDYKLFGDVL MFDSTYRTNR YDMPLVVFAG VNNHRHTVIY ALALMNNETI DSYEWALKTF  300
LAAMDGIAPK SVITDGDAAI RNAIENVFPK SKHRLCVWHV VQNATNVWTD GFVKGFVEVM  360
FCKGPPDAFE KKWAELLIEY KTVAEQKWVH NIYEKKEMWA EGYLREYFFV GCRSNQRCES  420
INSVVRLCVK SGLTLIELVD KLLQKIRHIH YRNFEAEVNT TMTRSAQIPN LTLIGEQAEA  480
LYTRAGYEYF FKQLLHEPSY VVNESYEDGE DIIKYLVNRH MHPNAPATVE YNREKDAYNC  540
TCKLFERVGF LCRHILAVLK HTHVKALPKS CILHRWTREA KSSSLDFGTN PTTSCRLGFG  600
LRLKELEEYS RDLFMWGCES VQRCTMVKGH IAAFDKGEVA QGFDETPVPE NPLGFEEEAV  660
ASTPQQSFPP NNIVDPQRDL GRRGGPRKAK RKMFHQRTST RCGICHIVGH SRRTCPSNYL  720
SLDFLNLGLV CL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-90FAR1-related sequence 5