PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G092200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 209aa    MW: 24063.7 Da    PI: 10.6674
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G092200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.6e-2411100189
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                        +fYn+Y  ++ Fsvrks++++s+  ++it rtf+Cs +g r++++k+ ek+ r+ a +rtgCka++ ++k++  +kw vt +++ Hn  l
  Aqcoe4G092200.1.p  11 NFYNRYVGQIKFSVRKSSTYRSRIMKKITGRTFCCSLQGLRDSKSKNFEKRMRNAADSRTGCKAMMAIRKKTgGEKWFVTIVVEAHNLIL 100
                        6***********************************************************************99*************665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-201198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEFDSEDDAY NFYNRYVGQI KFSVRKSSTY RSRIMKKITG RTFCCSLQGL RDSKSKNFEK  60
RMRNAADSRT GCKAMMAIRK KTGGEKWFVT IVVEAHNLIL VTPTNRYLFR SQWKMEPIQN  120
KMVDDMHSVG IRTSLVVDFL ASEAGGIQNV GFTRKDVNNN LSAKHKKKLV RDAQALLDHL  180
QQQQLDNPSF SYSIQVHSKR RMTNFFLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-23FAR1-related sequence 5