PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G093200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 192aa    MW: 20974.5 Da    PI: 9.7609
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G093200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.2e-4271148178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+e+C+adl++ak+y+rrhkvCe+hskapvv+v g++qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++
  Aqcoe4G093200.1.p  71 CCQAEKCSADLTDAKRYYRRHKVCEHHSKAPVVIVGGVRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKNSS 148
                        6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3565133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.25769146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-3970150IPR004333Transcription factor, SBP-box
PfamPF031109.0E-3372145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGSRVKVSLK EKGKKELVSM EEDIEDDEEI MGYGDDDKKK KVVSRRGSSG GGGGGGGVGI  60
GGGGGGVALP CCQAEKCSAD LTDAKRYYRR HKVCEHHSKA PVVIVGGVRQ RFCQQCSRFH  120
ELSEFDEAKR SCRRRLAGHN ERRRKNSSEF QGEGSSNKVA DPLKDNHCRQ VNQNGRIPLS  180
LSGNSKHFQI R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-3662145184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260271.16e-66PREDICTED: squamosa promoter-binding protein 1
SwissprotQ387404e-42SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLA0A2G5CZ991e-135A0A2G5CZ99_AQUCA; Uncharacterized protein
STRINGAquca_033_00055.11e-105(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.19e-41squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]