PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe4G101400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 133aa MW: 15036 Da PI: 8.2084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G101400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.8e-10	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f+rtG+C+yGd+C ++H++ Aqcoe4G101400.1.p 57 RGTCNHFLRTGFCQYGDSCIYIHPK 81 667********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	1.2E-7	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	1.41E-17	4	51	No hit	No description
Pfam	PF06220	3.9E-12	5	39	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	14.699	54	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	56	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	56	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	58	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-6	60	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MSLGKYYCDY CDKQFQDTPS ARKRHLQGLQ HQRAKALYYE SFKGQNQIQI QSDSFGRGTC 60 NHFLRTGFCQ YGDSCIYIHP KPQHLQNPIS QLMPTSEDAI RDGMSILLGN LPPSLRPPPE 120 GGYPPLPFVD WG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659729.1	4e-61	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	4e-40	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2G5CZJ2	9e-94	A0A2G5CZJ2_AQUCA; Uncharacterized protein
STRING	Aquca_033_00119.1	1e-94	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	7e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G101400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]